Core-Shell Capsule Image Segmentation through Deep Learning with Synthetic Training Data

Abstract

Abstract Core-shell capsules (CSC) are a promising approach for 3D cell culture because they overcome the challenges of traditional large-scale cell cultivation techniques used in tissue engineering. Currently, CSC are segmented from microscopic images in a cumbersome manual procedure to evaluate their properties, such as size or complete encapsulation of the core compartment. In this paper, we propose an automated segmentation process of CSC based on an unmodified YOLOv8 instance segmentation model.We train the model exclusively on synthetic CSC images created from 10 manually annotated real images and evaluate its performance using the common Intersection over Union (IoU) metric on a test set consisting of 181 real images. Without modifying the model or tuning the hyperparameters, we achieve a mean IoU of 0.86, underlining the potential of deep-learning-based CSC segmentation relying entirely on synthetic training data.