JOURNAL ARTICLE

Computational cell cycle analysis of single cell RNA-seq data

Abstract

The variation in the gene expression profiles of single cells in different phases of the cell cycle can present a leading source of variance between the cells and can interfere with the functional analysis of the transcritomic data. In this work, we review some of the few methods available to analyze cell cycle stages in scRNA-seq data and present a computational method for ordering single cells transcriptional profiles according to their cell cycle phases.

Keywords:
Cell cycle RNA-Seq Computer science Variance (accounting) Cell Computational biology Gene expression Gene Biology Transcriptome Genetics

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2
Cited By
0.21
FWCI (Field Weighted Citation Impact)
8
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0.55
Citation Normalized Percentile
Is in top 1%
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Citation History

Topics

Single-cell and spatial transcriptomics
Life Sciences →  Biochemistry, Genetics and Molecular Biology →  Molecular Biology
Gene Regulatory Network Analysis
Life Sciences →  Biochemistry, Genetics and Molecular Biology →  Molecular Biology
Gene expression and cancer classification
Life Sciences →  Biochemistry, Genetics and Molecular Biology →  Molecular Biology

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