JOURNAL ARTICLE

Isothermal-isobaric molecular dynamics using stochastic velocity rescaling

Giovanni BussiT. Zykova-TimanMichele Parrinello

Year: 2009 Journal:   The Journal of Chemical Physics Vol: 130 (7)Pages: 074101-074101   Publisher: American Institute of Physics

Abstract

The authors present a new molecular dynamics algorithm for sampling the isothermal-isobaric ensemble. In this approach the velocities of all particles and volume degrees of freedom are rescaled by a properly chosen random factor. The technical aspects concerning the derivation of the integration scheme and the conservation laws are discussed in detail. The efficiency of the barostat is examined in Lennard-Jones solid and liquid near the triple point and compared to the deterministic Nosé–Hoover and the stochastic Langevin methods. In particular, the dependence of the sampling efficiency on the choice of the thermostat and barostat relaxation times is systematically analyzed.

Keywords:
Thermostat Isobaric process Statistical physics Sampling (signal processing) Molecular dynamics Degrees of freedom (physics and chemistry) Isothermal process Conservation law Physics Classical mechanics Thermodynamics Quantum mechanics

Metrics

405
Cited By
4.20
FWCI (Field Weighted Citation Impact)
33
Refs
0.95
Citation Normalized Percentile
Is in top 1%
Is in top 10%

Citation History

Topics

Material Dynamics and Properties
Physical Sciences →  Materials Science →  Materials Chemistry
Protein Structure and Dynamics
Life Sciences →  Biochemistry, Genetics and Molecular Biology →  Molecular Biology
Theoretical and Computational Physics
Physical Sciences →  Physics and Astronomy →  Condensed Matter Physics

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